Software

  • kernscr an R package to perform kernel machine score test for pathway analysis in the presence of semi-competing risks. Available on CRAN, development version available on github.

  • ludic an R package to perform probabilistic record Linkage Using only DIagnosis Codes without direct identifiers, using C++ code to speed up computations. Available on CRAN, development version on github.

  • NPflow an R package to perform Dirichlet process mixture of multivariate normal, skew-normal or skew t-distributions modeling oriented towards flow-cytometry data preprocessing applications, using C++ code to speed up computations. Available on CRAN, development version on github.

  • TcGSA an R package to analyze longitudinal gene-expression data at the gene set level. Available on CRAN, development version on github.

  • tcgsaseq an R package to perform gene set analysis of longitudinal RNA-seq data with variance component score test, accounting for data heteroscedasticity through precision weights. Available on CRAN, development version on github.
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